用sqoop进行mysql和hdfs系统间的数据互导

转自：http://abloz.com/2012/07/19/data-between-the-mysql-and-hdfs-system-of-mutual-conductance-using-sqoop.html

 

sqoop 是apache下用于RDBMS和HDFS互相导数据的工具。
本文档是sqoop的使用实例，实现从mysql到hdfs互导数据，以及从Mysql导数据到HBase。

下载：

http://www.apache.org/dyn/closer.cgi/sqoop/

[zhouhh@Hadoop48 ~]$ wget http://labs.renren.com/apache-mirror/sqoop/1.4.1-incubating/sqoop-1.4.1-incubating__hadoop-1.0.0.tar.gz

最新用户手册

http://sqoop.apache.org/docs/1.4.1-incubating/SqoopUserGuide.html

 

一、从HBase库中直接导出到mysql中？

一开始我想从HBase库中直接导出到mysql中。
在mysql中创建一个库和表

mysql> create database toplists;
Query OK, 1 row affected (0.06 sec)
mysql> use toplists
Database changed
mysql> create table t1(id int not null primary key, name varchar(255),value int);
Query OK, 0 rows affected (0.10 sec)

hbase(main):011:0> scan 't1'
ROW COLUMN+CELL
1001 column=info:count, timestamp=1340265059531, value=724988
1009 column=info:count, timestamp=1340265059533, value=108051
...
total column=info:count, timestamp=1340265059534, value=833039
total_user_count column=info:, timestamp=1340266656307, value=154516
11 row(s) in 0.0420 seconds

[zhouhh@Hadoop48 ~]$ sqoop list-tables --connect jdbc:mysql://localhost/toplists --username root
java.lang.RuntimeException: Could not load db driver class: com.mysql.jdbc.Driver
at org.apache.sqoop.manager.SqlManager.makeConnection(SqlManager.java:657)
at org.apache.sqoop.manager.GenericJdbcManager.getConnection(GenericJdbcManager.java:52)
at org.apache.sqoop.manager.SqlManager.execute(SqlManager.java:473)
at org.apache.sqoop.manager.SqlManager.execute(SqlManager.java:496)
at org.apache.sqoop.manager.SqlManager.getColumnTypesForRawQuery(SqlManager.java:194)
at org.apache.sqoop.manager.SqlManager.getColumnTypes(SqlManager.java:178)
at org.apache.sqoop.manager.ConnManager.getColumnTypes(ConnManager.java:114)
at org.apache.sqoop.orm.ClassWriter.getColumnTypes(ClassWriter.java:1235)
at org.apache.sqoop.orm.ClassWriter.generate(ClassWriter.java:1060)
at org.apache.sqoop.tool.CodeGenTool.generateORM(CodeGenTool.java:82)
at org.apache.sqoop.tool.ExportTool.exportTable(ExportTool.java:64)
at org.apache.sqoop.tool.ExportTool.run(ExportTool.java:97)
at org.apache.sqoop.Sqoop.run(Sqoop.java:145)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:65)
at org.apache.sqoop.Sqoop.runSqoop(Sqoop.java:181)
at org.apache.sqoop.Sqoop.runTool(Sqoop.java:220)
at org.apache.sqoop.Sqoop.runTool(Sqoop.java:229)
at org.apache.sqoop.Sqoop.main(Sqoop.java:238)
at com.cloudera.sqoop.Sqoop.main(Sqoop.java:57)

需下载 MySQL JDBC Connector 库，并将其复制到$SQOOP_HOME/lib
下载mysql jdbc连接库

地址：

http://www.mysql.com/downloads/connector/j/

[zhouhh@Hadoop48 ~]$ wget http://dev.mysql.com/get/Downloads/Connector-J/mysql-connector-java-5.1.21.tar.gz/from/http://cdn.mysql.com/
[zhouhh@Hadoop48 mysql-connector-java-5.1.21]$ cp mysql-connector-java-5.1.21-bin.jar ../sqoop/lib/.
[zhouhh@Hadoop48 ~]$ sqoop list-tables --connect jdbc:mysql://localhost/toplists --username root
t1

[zhouhh@Hadoop48 ~]$ sqoop-export --connect jdbc:mysql://localhost/toplists --username root --table t1 --export-dir /hbase

java.io.IOException: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
at org.apache.sqoop.mapreduce.ExportOutputFormat.getRecordWriter(ExportOutputFormat.java:79)
at org.apache.hadoop.mapred.MapTask$NewDirectOutputCollector.<init>(MapTask.java:628)
at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:753)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:370)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.mapred.Child.main(Child.java:249)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

这是可能由jdbc版本引起的，换成5.1.18

[zhouhh@Hadoop48 ~]$ sqoop-export --connect jdbc:mysql://localhost:3306/toplists --username root --table t1 --export-dir /hbase

Error initializing attempt_201206271529_0006_r_000000_0:
org.apache.hadoop.util.DiskChecker$DiskErrorException: Could not find any valid local directory for ttprivate/taskTracker/zhouhh/jobcache/job_201206271529_0006/jobToken
at org.apache.hadoop.fs.LocalDirAllocator$AllocatorPerContext.getLocalPathForWrite(LocalDirAllocator.java:381)
at org.apache.hadoop.fs.LocalDirAllocator.getLocalPathForWrite(LocalDirAllocator.java:146)
at org.apache.hadoop.fs.LocalDirAllocator.getLocalPathForWrite(LocalDirAllocator.java:127)
at org.apache.hadoop.mapred.TaskTracker.localizeJobTokenFile(TaskTracker.java:4271)
at org.apache.hadoop.mapred.TaskTracker.initializeJob(TaskTracker.java:1177)
at org.apache.hadoop.mapred.TaskTracker.localizeJob(TaskTracker.java:1118)
at org.apache.hadoop.mapred.TaskTracker$5.run(TaskTracker.java:2430)
at java.lang.Thread.run(Thread.java:722)

DiskErrorException ，定位半天，发现是另一台机器的空间满了，在mapreduce运行时会引起该异常。

[zhouhh@Hadoop46 ~]$ df
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/sda3 28337624 26877184 0 100% /

[zhouhh@Hadoop48 ~]$ sqoop-export --connect jdbc:mysql://192.168.10.48:3306/toplists --username root --table t1 --export-dir /hbase
Caused by: java.sql.SQLException: null, message from server: "Host 'Hadoop47' is not allowed to connect to this MySQL server"

这是权限问题，设置授权：

mysql> GRANT ALL PRIVILEGES ON *.* TO '%'@'%';#允许所有用户查看和修改databaseName数据库模式的内容，否则别的IP连不上本MYSQL
Query OK, 0 rows affected (0.06 sec)

这是测试，所以权限没有限制。实际工作环境需谨慎授权。

[zhouhh@Hadoop48 ~]$ sqoop-export --connect jdbc:mysql://192.168.10.48:3306/toplists --username root --table t1 --export-dir /hbase
Note: /tmp/sqoop-zhouhh/compile/fa1d1c042030b0ec8537c7a4cd02aab3/t1.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
java.lang.NumberFormatException: For input string: "7"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:481)
at java.lang.Integer.valueOf(Integer.java:582)
at t1.__loadFromFields(t1.java:218)
at t1.parse(t1.java:170)
at org.apache.sqoop.mapreduce.TextExportMapper.map(TextExportMapper.java:77)
at org.apache.sqoop.mapreduce.TextExportMapper.map(TextExportMapper.java:36)
at org.apache.hadoop.mapreduce.Mapper.run(Mapper.java:144)
at org.apache.sqoop.mapreduce.AutoProgressMapper.run(AutoProgressMapper.java:183)
at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:764)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:370)
at org.apache.hadoop.mapred.Child$4.run(Child.java:255)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.mapred.Child.main(Child.java:249)

这是由于/hbase是hbase的库表，根本不是可以导的格式，所以报错。

[zhouhh@Hadoop48 ~]$ sqoop-export --connect jdbc:mysql://192.168.10.48:3306/toplists --username root --table t1 --export-dir /hbase/t1
[zhouhh@Hadoop48 ~]$ sqoop-export --verbose --connect jdbc:mysql://192.168.10.48:3306/toplists --username root --table t1 --update-key id --input-fields-terminated-by '\t' --export-dir /hbase/t1
Note: /tmp/sqoop-zhouhh/compile/8ce6556eb13b3000550a9c864eaa6820/t1.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
[zhouhh@Hadoop48 ~]$

但将导出目录指到/hbase/t1表中，导出不会报错，而mysql中没有数据。后面才了解到，sqoop没有直接从hbase中将表导出到mysql的办法。必须先将hbase导出成平面文件，或者导出到hive中，才可以用sqoop将数据导出到mysql。

 

二、从mysql中导到hdfs。

创建mysql表，将其导入到hdfs

mysql> create table test(id int not null primary key auto_increment,name varchar(64) not null,price decimal(10,2), cdate date,version int,comment varchar(255));
Query OK, 0 rows affected (0.10 sec)
mysql> insert into test values(null,'iphone',3900.00,'2012-7-18',1,'8g');
Query OK, 1 row affected (0.04 sec)
mysql> insert into test values(null,'ipad',3200.00,'2012-7-16',2,'16g');
Query OK, 1 row affected (0.00 sec)
mysql> select * from test;
+----+--------+---------+------------+---------+---------+
| id | name | price | cdate | version | comment |
+----+--------+---------+------------+---------+---------+
| 1 | iphone | 3900.00 | 2012-07-18 | 1 | 8g |
| 2 | ipad | 3200.00 | 2012-07-16 | 2 | 16g |
+----+--------+---------+------------+---------+---------+
2 rows in set (0.00 sec)

导入：

[zhouhh@Hadoop48 ~]$ sqoop import --connect jdbc:mysql://Hadoop48/toplists --table test -m 1
java.lang.RuntimeException: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Access denied for user ''@'Hadoop48' to database 'toplists'
at org.apache.sqoop.manager.CatalogQueryManager.getColumnNames(CatalogQueryManager.java:162)

给空用户授权

mysql> GRANT ALL PRIVILEGES ON *.* TO ''@'%';

[zhouhh@Hadoop48 ~]$ sqoop import --connect jdbc:mysql://Hadoop48/toplists --username root --table test -m 1

12/07/18 11:10:16 INFO manager.MySQLManager: Preparing to use a MySQL streaming resultset.
12/07/18 11:10:16 INFO tool.CodeGenTool: Beginning code generation
12/07/18 11:10:16 INFO manager.SqlManager: Executing SQL statement: SELECT t.* FROM `index_mapping` AS t LIMIT 1
12/07/18 11:10:16 INFO orm.CompilationManager: HADOOP_HOME is /home/zhoulei/hadoop-1.0.0/libexec/..
注: /tmp/sqoop-zhoulei/compile/2b04bdabb7043e4f75b215d72f65388e/index_mapping.java使用或覆盖了已过时的 API。
注: 有关详细信息, 请使用 -Xlint:deprecation 重新编译。
12/07/18 11:10:18 INFO orm.CompilationManager: Writing jar file: /tmp/sqoop-zhoulei/compile/2b04bdabb7043e4f75b215d72f65388e/index_mapping.jar
12/07/18 11:10:18 WARN manager.MySQLManager: It looks like you are importing from mysql.
12/07/18 11:10:18 WARN manager.MySQLManager: This transfer can be faster! Use the --direct
12/07/18 11:10:18 WARN manager.MySQLManager: option to exercise a MySQL-specific fast path.
12/07/18 11:10:18 INFO manager.MySQLManager: Setting zero DATETIME behavior to convertToNull (mysql)
12/07/18 11:10:25 INFO mapreduce.ImportJobBase: Beginning import of index_mapping
12/07/18 11:10:26 INFO mapred.JobClient: Running job: job_201207101344_0519
12/07/18 11:10:27 INFO mapred.JobClient: map 0% reduce 0%
12/07/18 11:10:40 INFO mapred.JobClient: map 100% reduce 0%
12/07/18 11:10:45 INFO mapred.JobClient: Job complete: job_201207101344_0519
12/07/18 11:10:45 INFO mapred.JobClient: Counters: 18
12/07/18 11:10:45 INFO mapred.JobClient: Job Counters
12/07/18 11:10:45 INFO mapred.JobClient: SLOTS_MILLIS_MAPS=12083
12/07/18 11:10:45 INFO mapred.JobClient: Total time spent by all reduces waiting after reserving slots (ms)=0
12/07/18 11:10:45 INFO mapred.JobClient: Total time spent by all maps waiting after reserving slots (ms)=0
12/07/18 11:10:45 INFO mapred.JobClient: Launched map tasks=1
12/07/18 11:10:45 INFO mapred.JobClient: SLOTS_MILLIS_REDUCES=0
12/07/18 11:10:45 INFO mapred.JobClient: File Output Format Counters
12/07/18 11:10:45 INFO mapred.JobClient: Bytes Written=28
12/07/18 11:10:45 INFO mapred.JobClient: FileSystemCounters
12/07/18 11:10:45 INFO mapred.JobClient: HDFS_BYTES_READ=87
12/07/18 11:10:45 INFO mapred.JobClient: FILE_BYTES_WRITTEN=30396
12/07/18 11:10:45 INFO mapred.JobClient: HDFS_BYTES_WRITTEN=28
12/07/18 11:10:45 INFO mapred.JobClient: File Input Format Counters
12/07/18 11:10:45 INFO mapred.JobClient: Bytes Read=0
12/07/18 11:10:45 INFO mapred.JobClient: Map-Reduce Framework
12/07/18 11:10:45 INFO mapred.JobClient: Map input records=2
12/07/18 11:10:45 INFO mapred.JobClient: Physical memory (bytes) snapshot=79167488
12/07/18 11:10:45 INFO mapred.JobClient: Spilled Records=0
12/07/18 11:10:45 INFO mapred.JobClient: CPU time spent (ms)=340
12/07/18 11:10:45 INFO mapred.JobClient: Total committed heap usage (bytes)=56623104
12/07/18 11:10:45 INFO mapred.JobClient: Virtual memory (bytes) snapshot=955785216
12/07/18 11:10:45 INFO mapred.JobClient: Map output records=2
12/07/18 11:10:45 INFO mapred.JobClient: SPLIT_RAW_BYTES=87
12/07/18 11:10:45 INFO mapreduce.ImportJobBase: Transferred 28 bytes in 20.2612 seconds (1.382 bytes/sec)
12/07/18 11:10:45 INFO mapreduce.ImportJobBase: Retrieved 2 records.

检查数据是否导入

[zhouhh@Hadoop48 ~]$ fs -cat /user/zhouhh/test/part-m-00000
1,iphone,3900.00,2012-07-18,1,8g
2,ipad,3200.00,2012-07-16,2,16g

或

[zhouhh@Hadoop48 ~]$ fs -cat test/part-m-00000
1,iphone,3900.00,2012-07-18,1,8g
2,ipad,3200.00,2012-07-16,2,16g

 

三、从hdfs导出到mysql

清空表

mysql> delete from test;
Query OK, 2 rows affected (0.00 sec)

mysql> select * from test;
Empty set (0.00 sec)

导出

[zhouhh@Hadoop48 ~]$ sqoop-export --connect jdbc:mysql://192.168.10.48:3306/toplists --username root --table test --export-dir test
Note: /tmp/sqoop-zhouhh/compile/7adaaa7ffe5f49ed9d794b1be8a9a983/test.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.

导出时，–connect,–table, –export-dir是必须设置的。其中toplists是库名，–table是该库下的表名。 –export-dir是要导出的HDFS平面文件位置。如果不是绝对路径，指/user/username/datadir

检查mysql表

mysql> select * from test;
+----+--------+---------+------------+---------+---------+
| id | name | price | cdate | version | comment |
+----+--------+---------+------------+---------+---------+
| 1 | iphone | 3900.00 | 2012-07-18 | 1 | 8g |
| 2 | ipad | 3200.00 | 2012-07-16 | 2 | 16g |
+----+--------+---------+------------+---------+---------+
2 rows in set (0.00 sec)

可见导出成功。

 

四、不执行mapreduce，但生成导入代码

[zhouhh@Hadoop48 ~]$ sqoop codegen --connect jdbc:mysql://192.168.10.48:3306/toplists --username root --table test --class-name Mycodegen
Note: /tmp/sqoop-zhouhh/compile/104b871487669b89dcd5b9b2c61f905f/Mycodegen.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.

[zhouhh@Hadoop48 ~]$ sqoop help codegen
usage: sqoop codegen [GENERIC-ARGS] [TOOL-ARGS]

sqoop导入时，可以加选择语句，以过滤和综合多表，用–query.也可以只加条件，用–where。这样可以不必每次导入整张表。 如 –where ‘id > 1000′
示例，采用join选择多表数据：
sqoop import –query ‘select a.*,b.* from a join b on (a.id == b.id) where $conditions’ -m 1 –target-dir /usr/foo/joinresults

 

五、将mysql表导入到HBase

虽然目前，sqoop没有将HBase直接导入mysql的办法，但将mysql直接导入HBase是可以的。需指定–hbase-table，用–hbase-create-table来自动在HBase中创建表。–column-family指定列族名。–hbase-row-key指定rowkey对应的mysql的键。
[zhouhh@Hadoop48 ~]$ sqoop import –connect jdbc:mysql://Hadoop48/toplists –table test –hbase-table a –column-family name –hbase-row-key id –hbase-create-table –username ‘root’

检查hbase被导入的表：

hbase(main):002:0> scan 'a'
ROW COLUMN+CELL
1 column=name:cdate, timestamp=1342601695952, value=2012-07-18
1 column=name:comment, timestamp=1342601695952, value=8g
1 column=name:name, timestamp=1342601695952, value=iphone
1 column=name:price, timestamp=1342601695952, value=3900.00
1 column=name:version, timestamp=1342601695952, value=1
2 column=name:cdate, timestamp=1342601695952, value=2012-07-16
2 column=name:comment, timestamp=1342601695952, value=16g
2 column=name:name, timestamp=1342601695952, value=ipad
2 column=name:price, timestamp=1342601695952, value=3200.00
2 column=name:version, timestamp=1342601695952, value=2
2 row(s) in 0.2370 seconds

关于导入的一致性：建议停止mysql表的写入再导入到HDFS或HIVE，否则，mapreduce可能会丢失新增的数据。
关于效率：mysql直接模式(–direct)导入的方式效率高。但不支持大对象数据，类型为CLOB或BLOB的列。用JDBC效率较低，但有专用API可以支持CLOB及BLOB。

六、从HBase导出数据到Mysql

目前没有直接的导出命令。但有两个方法可以将HBase数据导出到mysql。

其一，将HBase导出成HDFS平面文件，再导出到mysql.
其二，将HBase数据导出到HIVE，再导出到mysql，参见后续文章《从hive将数据导出到mysql 》