【R语言之Linux环境安装】

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R语言

R语言环境安装

[root@hadoop0 ~]# cd /opt/

[root@hadoop0 opt]# df -h

Filesystem Size Used Avail Use% Mounted on

/dev/mapper/VolGroup-lv_root 18G 9.8G 6.7G 60% /

tmpfs 250M 72K 250M 1% /dev/shm

/dev/sda1 485M 33M 427M 8% /boot

[root@hadoop0 opt]# wget http://mirror.bjtu.edu.cn/cran/src/base/R-3/R-3.0.1.tar.gz

--1999-08-04 18:11:14-- http://mirror.bjtu.edu.cn/cran/src/base/R-3/R-3.0.1.tar.gz

Resolving mirror.bjtu.edu.cn... 202.112.154.58, 2001:da8:205::58

Connecting to mirror.bjtu.edu.cn|202.112.154.58|:80... connected.

HTTP request sent, awaiting response... 200 OK

Length: 25508280 (24M) [application/octet-stream]

Saving to: R-3.0.1.tar.gz?

100%[============================>] 25,508,280 311K/s in 2m 10s

1999-08-04 18:13:24 (192 KB/s) - R--3.0.1.tar.gz saved [25508280/25508280]

[root@hadoop0 opt]# ls

apache-flume-1.6.0-bin

apache-storm-0.9.6.tar.gz

elasticsearch-2.3.3

jdk1.7.0_79

R-3.0.1.tar.gz rh

spark-1.3.1-bin-hadoop2.6

sqoop-1.4.6.bin__hadoop-2.0.4-alpha.tar.gz

apache-flume-1.6.0-bin.tar.gz bigdata

elasticsearch-2.3.3.zip

kafka_2.11-0.9.0.1.tgz

redis-3.2.0

scala-2.10.5

spark-1.3.1-bin-hadoop2.6.tgz

zookeeper-3.4.6.tar.gz

apache-flume-1.6.0-bin.tar.gz.1 data

hadoop-2.7.2.tar.gz ORCLfmap

redis-3.2.0.tar.gz scala-2.10.5.tgz

sqoop-1.4.6

[root@hadoop0 opt]#

[root@hadoop0 opt]# tar -zxvf R-3.0.1.tar.gz

R-3.0.1/VERSION-NICK

tar: R-3.0.1/VERSION-NICK: time stamp 2013-05-06 20:02:06 is 434079738.717527534 s in the future

tar: R-3.0.1: time stamp 2013-05-16 15:11:20 is 434926292.717415555 s in the future

[root@hadoop0 opt]# ls

apache-flume-1.6.0-bin

apache-storm-0.9.6.tar.gz

elasticsearch-2.3.3

jdk1.7.0_79

R-3.0.1

redis-3.2.0.tar.gz

scala-2.10.5.tgz

sqoop-1.4.6

apache-flume-1.6.0-bin.tar.gz

bigdata

elasticsearch-2.3.3.zip

kafka_2.11-0.9.0.1.tgz R-3.0.1.tar.gz rh

spark-1.3.1-bin-hadoop2.6

sqoop-1.4.6.bin__hadoop-2.0.4-alpha.tar.gz

apache-flume-1.6.0-bin.tar.gz.1 data

hadoop-2.7.2.tar.gz ORCLfmap

redis-3.2.0 scala-2.10.5

spark-1.3.1-bin-hadoop2.6.tgz

zookeeper-3.4.6.tar.gz

[root@hadoop0 opt]# cd R-3.0.1

[root@hadoop0 R-3.0.1]# ./configure

checking for fl32... no

checking for af77... no

checking for fc... no

configure: error: No F77 compiler found

[root@hadoop0 R-3.0.1]# yum install gcc-gfortran

[root@hadoop0 R-3.0.1]# ./configure

checking X11/Intrinsic.h usability... no

checking X11/Intrinsic.h presence... no

checking for X11/Intrinsic.h... no

configure: error: --with-x=yes (default) and X11 headers/libs are not available

[root@hadoop0 R-3.0.1]# yum install libXt-devel

[root@hadoop0 R-3.0.1]# ./configure

config.status: creating src/include/config.h

config.status: executing libtool commands

config.status: executing stamp-h commands

R is now configured for i686-pc-linux-gnu

Source directory: .

Installation directory: /usr/local

C compiler: gcc -std=gnu99 -g -O2

Fortran 77 compiler: gfortran -g -O2

C++ compiler: g++ -g -O2

Fortran 90/95 compiler: gfortran -g -O2

Obj-C compiler:

Interfaces supported: X11

External libraries: readline

Additional capabilities: NLS

Options enabled: shared BLAS, R profiling

Recommended packages: yes

configure: WARNING: you cannot build info or HTML versions of the R manuals

configure: WARNING: you cannot build PDF versions of the R manuals

configure: WARNING: you cannot build PDF versions of vignettes and help pages

[root@hadoop0 R-3.0.1]# make

trying to compile and link a JNI progam

detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux

detected JNI linker flags : -L$(JAVA_HOME)/jre/lib/i386/client -ljvm

make[2]: Entering directory `/tmp/RJRECONF.FOhjZn'

gcc -std=gnu99 -I/opt/R-3.0.1/include -DNDEBUG -I/opt/jdk1.7.0_79/include -I/opt/jdk1.7.0_79/include/linux -I/usr/local/include -fpic -g -O2 -c conftest.c -o conftest.o

gcc -std=gnu99 -shared -L/usr/local/lib -o conftest.so conftest.o -L/opt/jdk1.7.0_79/jre/lib/i386/client -ljvm -L/opt/R-3.0.1/lib -lR

make[2]: Leaving directory `/tmp/RJRECONF.FOhjZn'

Java library path: $(JAVA_HOME)/jre/lib/i386/client

JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux

JNI linker flags : -L$(JAVA_HOME)/jre/lib/i386/client -ljvm

Updating Java configuration in /opt/R-3.0.1

Done.

make[1]: Leaving directory `/opt/R-3.0.1'

[root@hadoop0 R-3.0.1]# make install

[root@hadoop0 R-3.0.1]

配置环境变量

JAVA_HOME=/opt/jdk1.7.0_79

STORM_HOME=/opt/bigdata/stomr096

HIVE_HOME=/opt/bigdata/hive2.0

HADOOP_HOME=/opt/bigdata/hadoop272

HBASE_HOME=/opt/bigdata/hbase-1.1.5

R_HOME=/usr/R-3.0.1/lib/R/bin

PATH=$PATH:$JAVA_HOME/bin:$STORM_HOME/bin:$HIVE_HOME/bin:$HADOOP_HOME/bin:$HBASE_HOME/bin:$R_HOME

export JAVA_HOME STORM_HOME HIVE_HOME HADOOP_HOME HBASE_HOME

export PATH

/.bash_profile" 30L, 744C written

[root@hadoop0 R-3.0.1]# source ~/.bash_profile

[root@hadoop0 R-3.0.1]# R

R version 3.0.1 (2013-05-16) -- "Good Sport"

Platform: i686-pc-linux-gnu (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.

You are welcome to redistribute it under certain conditions.

Type 'license()' or 'licence()' for distribution details.

Natural language support but running in an English locale

R is a collaborative project with many contributors.

Type 'contributors()' for more information and

'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or

'help.start()' for an HTML browser interface to help.

Type 'q()' to quit R.

错误解决方案：

1）make: Warning: File `/usr/src/linux-2.6.35.7-nanosg20/arch/arm/Makefile' has modification time 3.4e+08 s in the f

修改系统时间与server同步：date -s '13:49:00 2014-01-18'

2)./configure 报错
configure: error: No F77 compiler found
解决方法：
yum install gcc-gfortran

3)./configure 报错
configure: error: --with-readline=yes (default) and headers/libs are not available
解决方法：
yum install readline-devel

4）./configure 报错
configure: error: --with-x=yes (default) and X11 headers/libs are not available
解决方法：
yum install libXt-devel

5）./configure 报错
configure: error: C++ preprocessor "/lib/cpp" fails sanity check
解决方法：
yum install gcc-c++ glibc-headers